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Snapshot 1 of RIG-I scanning on RNA duplex
DOI:10.2210/pdb3zd6/pdb   NDB ID: NA2602
3ZD6
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/rna
    Structure Weight: 86217.88
    Molecule: PROBABLE ATP-DEPENDENT RNA HELICASE DDX58
    Polymer: 1 Type: protein Length: 696
    Chains: A
    EC#: 3.6.4.13   
    Organism Homo sapiens
    Gene Name DDX58
    UniProtKB:   Protein Feature View | Search PDB | O95786  
    Molecule: RNA DUPLEX
    Polymer: 2 Type: rna Length: 10
    Chains: C, D
    Organism synthetic construct
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human  
    Polymer: 2
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3ZD7  SNAPSHOT 3 OF RIG-I SCANNING ON RNA DUPLEX 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ZN
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    ZN Zn
    ZINC ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2602
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Luo, D.,  Pyle, A.M.

    Deposition:   2012-11-25
    Release:   2013-08-07
    Last Modified (REVDAT):   2013-09-11
     
  •   Revision History    Hide
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    2013-09-11
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.80
    R-Value: 0.224 (obs.)
    R-Free: 0.279
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 48.47 α = 90.00 
    b = 78.02 β = 90.00 
    c = 225.10 γ = 90.00