3X3F

TRAIL-R2 Extracellular Region Complexed to a Fab fragment from Human Agonist Antibody KMTR2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 3X3F

Classification: APOPTOSIS / IMMUNE SYSTEM

Total Structure Weight: 64943.57

Macromolecule Entities
Molecule Chains Length Organism Details
Heavy chain of KMTR2 H 229 Homo sapiens
Light chain of KMTR2 L 214 Homo sapiens
Tumor necrosis factor receptor superfamily member 10B A 142 Homo sapiens Fragment: UNP residues 54-184
Mutation: A67V
Gene Name(s): TNFRSF10B Gene View DR5 KILLER TRAILR2 TRICK2 ZTNFR9 UNQ160/PRO186
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

H N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

L GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

H CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.186
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 144.97 α = 90.00
b = 151.56 β = 90.00
c = 65.04 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-01-20
  • Released Date: 2015-12-23
  • Deposition author(s): Tamada, T.

Revision History

  • Version 1_0: 2015-12-23

    Type: Initial release

  • Version 1_1: 2015-12-30

    Type: Derived calculations