3WK3

Orotidine 5'-monophosphate decarboxylase K72A mutant from M. thermoautotrophicus complexed with orotidine 5'-monophosphate ethyl ester


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.26 Å
  • R-Value Free: 0.177
  • R-Value Work: 0.165

Literature

Macromolecules
Sequence Display for 3WK3

Classification: LYASE

Total Structure Weight: 27901.73

Macromolecule Entities
Molecule Chains Length Organism Details
Orotidine 5'-phosphate decarboxylase A 252 Methanothermobacter thermautotrophicus EC#: 4.1.1.23 IUBMB
Mutation: K72A, R101P, L226R, N227I
Gene Name(s): pyrF MTH_129
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
O7E
Query on O7E

A 6-(ethoxycarbonyl)uridine 5'-(dihydrogen phosphate)
C12 H17 N2 O11 P
DZWXMWNQARNSMH-PEBGCTIMSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.26 Å
  • R-Value Free: 0.177
  • R-Value Work: 0.165
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 57.99 α = 90.00
b = 103.47 β = 90.00
c = 73.63 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-10-17
  • Released Date: 2013-12-04
  • Deposition author(s): Fujihashi, M., Pai, E.F., Miki, K.

Revision History

  • Version 1_0: 2013-12-04

    Type: Initial release