3WIH

Crystal structure of the third fibronectin domain (Fn3) of human ROBO1 in complex with the Fab fragment of murine monoclonal antibody B2212A.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.189

Literature

Macromolecules
Sequence Display for 3WIH

Classification: IMMUNE SYSTEM

Total Structure Weight: 115504.10

Macromolecule Entities
Molecule Chains Length Organism Details
Roundabout homolog 1 A, B 97 Homo sapiens Gene Name(s): ROBO1 Gene View DUTT1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
anti-human ROBO1 antibody B2212A Fab light chain L, M 213 Mus musculus
anti-human ROBO1 antibody B2212A Fab heavy chain H, I 219 Mus musculus

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

H, I GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.189
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 159.47 α = 90.00
b = 102.60 β = 127.57
c = 97.24 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-09-12
  • Released Date: 2015-01-21
  • Deposition author(s): Nakayama, T., Mizohata, E., Yamashita, T., Nagatoishi, M., Iwanari, H., Mochizuki, Y., Kado, Y., Yokota, Y., Sato, R., Tsumoto, K., Fujitani, H., Kodama, T., Hamakubo, T., Inoue, T.

Revision History

  • Version 1_0: 2015-01-21

    Type: Initial release

  • Version 1_1: 2015-03-04

    Type: Database references