3WIF

Crystal structure of anti-prostaglandin E2 Fab fragment 9Cl-PGF2beta complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.172

Literature

Macromolecules
Sequence Display for 3WIF

Classification: IMMUNE SYSTEM

Total Structure Weight: 47777.77

Macromolecule Entities
Molecule Chains Length Organism Details
mAb Fab H fragment A 218 Mus musculus
mAb Fab L fragment B 217 Mus musculus

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ON5
Query on ON5

A (Z)-7-[(1R,2R,3R,5R)-5-chloranyl-3-oxidanyl- 2-[(E,3S)-3-oxidanyloct-1-enyl]cyclopentyl]hept- 5-enoic acid
C20 H33 Cl O4
RDZUDQFNGNUIKH-JZFBHDEDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.172
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 70.66 α = 90.00
b = 82.31 β = 90.00
c = 82.56 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-09-12
  • Released Date: 2014-09-17
  • Deposition author(s): Sugahara, M., Ago, H., Saino, H., Miyano, M.

Revision History

No revisions since initial release