3WHX

Crystal structure of anti-prostaglandin E2 Fab fragment PGE1 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.168

Literature

Macromolecules
Sequence Display for 3WHX

Classification: IMMUNE SYSTEM

Total Structure Weight: 47759.33

Macromolecule Entities
Molecule Chains Length Organism Details
mAb Fab H fragment A 218 Mus musculus
mAb Fab L fragment B 217 Mus musculus

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
XPG
Query on XPG

B 7-[(1R,3R)-3-hydroxy-2-[(1E,3S)-3-hydroxyoct- 1-en-1-yl]-5-oxocyclopentyl]heptanoic acid
Prostaglandin E1 (Synonym)
C20 H34 O5
GMVPRGQOIOIIMI-DWKJAMRDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.168
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 70.46 α = 90.00
b = 82.03 β = 90.00
c = 82.31 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-09-03
  • Released Date: 2014-09-10
  • Deposition author(s): Sugahara, M., Ago, H., Saino, H., Miyano, M.

Revision History

  • Version 1_0: 2014-09-10

    Type: Initial release