3WFH

Crystal structure of anti-Prostaglandin E2 Fab fragment PGE2 complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.168

Literature

Macromolecules
Sequence Display for 3WFH

Classification: IMMUNE SYSTEM

Total Structure Weight: 47528.12

Macromolecule Entities
Molecule Chains Length Organism Details
mAb Fab H fragment A 217 Mus musculus
mAb Fab L fragment B 216 Mus musculus

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
P2E
Query on P2E

B (Z)-7-[(1R,2R,3R)-3-hydroxy-2-[(E,3S)-3-hydroxyoct- 1-enyl]-5-oxo-cyclopentyl]hept-5-enoic acid
Prostaglandin E2 (Synonym)
C20 H32 O5
XEYBRNLFEZDVAW-ARSRFYASSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.168
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 70.26 α = 90.00
b = 82.53 β = 90.00
c = 82.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-07-19
  • Released Date: 2014-07-23
  • Deposition author(s): Sugahara, M., Ago, H., Saino, H., Miyano, M.

Revision History

  • Version 1_0: 2014-07-23

    Type: Initial release