3W2O

EGFR Kinase domain T790M/L858R Mutant with TAK-285

Structural Biology Knowledgebase: 3W2O SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.180

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3W2O

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 38569.27

Macromolecule Entities
Molecule Chains Length Organism Details
Epidermal growth factor receptor A 331 Homo sapiens EC#: 2.7.10.1 IUBMB
Fragment: Kinase domain, UNP residues 698-1022
Mutation: T790M, L858R
Gene Name(s): EGFR Gene View ERBB ERBB1 HER1

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
03P
Query on 03P

A N-{2-[4-({3-chloro-4-[3-(trifluoromethyl)phenoxy]phenyl}amino)- 5H-pyrrolo[3,2-d]pyrimidin-5-yl]ethyl}-3- hydroxy-3-methylbutanamide
TAK-285 (Synonym)
C26 H25 Cl F3 N5 O3
ZYQXEVJIFYIBHZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
03P IC50: 4 - 23 nM (99) BindingDB

N/A in BindingMoad
IC50: 8400 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.180
  • Space Group: I 2 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 143.95 α = 90.00
b = 143.95 β = 90.00
c = 143.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-03
  • Released Date: 2013-01-16
  • Deposition author(s): Sogabe, S., Kawakita, Y., Igaki, S.

Revision History

  • 2013-08-21
    Type: Citation | Details: Citation update