3W0U

human Glyoxalase I with an N-hydroxypyridone inhibitor

Structural Biology Knowledgebase: 3W0U SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.214

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3W0U

Classification: LYASE / LYASE INHIBITOR

Total Structure Weight: 43202.02

Macromolecule Entities
Molecule Chains Length Organism Details
Lactoylglutathione lyase A, B 187 Homo sapiens EC#: 4.4.1.5 IUBMB
Gene Name(s): GLO1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HPW
Query on HPW

A, B N-[3-(1-Hydroxy-6-oxo-4-phenyl-1,6-dihydro- pyridin-2-yl)-5-methanesulfonylamino-phenyl]- methanesulfonamide
C19 H19 N3 O6 S2
AKWZUDBNQVPNBK-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.214
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 86.17 α = 90.00
b = 67.38 β = 90.00
c = 68.48 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-02
  • Released Date: 2013-11-06
  • Deposition author(s): Fukami, T.A., Irie, M., Matsuura, T.

Revision History

No revisions since initial release