3VW9

Human Glyoxalase I with an N-hydroxypyridone inhibitor

Structural Biology Knowledgebase: 3VW9 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.47 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.164

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VW9

Classification: LYASE / LYASE INHIBITOR

Total Structure Weight: 43292.11

Macromolecule Entities
Molecule Chains Length Organism Details
Lactoylglutathione lyase A, B 187 Homo sapiens EC#: 4.4.1.5 IUBMB
Gene Name(s): GLO1 Gene View

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EPE
Query on EPE

A 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
HPJ
Query on HPJ

A, B 1-hydroxy-6-[1-(3-methoxypropyl)-1H-pyrrolo[2,3- b]pyridin-5-yl]-4-phenylpyridin-2(1H)-one
C22 H21 N3 O3
MIWLVFZOCHMICD-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
HPJ IC50: 11 nM (100) BindingDB

IC50: 11 nM  BindingMOAD
IC50: 11 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.47 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.164
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 85.99 α = 90.00
b = 66.98 β = 90.00
c = 68.53 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-10
  • Released Date: 2012-12-12
  • Deposition author(s): Fukami, T.A., Irie, M., Matsuura, T.

Revision History

No revisions since initial release