3VUM

Crystal structure of a cysteine-deficient mutant M7 in MAP kinase JNK1

Structural Biology Knowledgebase: 3VUM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.69 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.188

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VUM

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 44201.33

Macromolecule Entities
Molecule Chains Length Organism Details
Mitogen-activated protein kinase 8 A 370 Homo sapiens EC#: 2.7.11.24 IUBMB
Fragment: kinase domain, UNP residues 1-364
Mutation: C41V, C79V, C116S, C137V, C163A, C213V, C245S
Gene Name(s): MAPK8 Gene View JNK1 PRKM8 SAPK1 SAPK1C
Peptide from C-Jun-amino-terminal kinase-interacting protein 1 F 11 Homo sapiens Gene Name(s): MAPK8IP1 Gene View IB1 JIP1 PRKM8IP

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol
TRS
Query on TRS

A 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.69 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.188
  • Space Group: P 63 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 161.88 α = 90.00
b = 161.88 β = 90.00
c = 87.97 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-02
  • Released Date: 2013-02-13
  • Deposition author(s): Nakaniwa, T., Kinoshita, T., Inoue, T.

Revision History

No revisions since initial release