3VTI

Crystal structure of HypE-HypF complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.206

Literature

Macromolecules
Sequence Display for 3VTI

Classification: TRANSFERASE

Total Structure Weight: 241907.67

Macromolecule Entities
Molecule Chains Length Organism Details
Hydrogenase maturation factor A, B 761 Caldanaerobacter subterraneus EC#: 2.1.3 IUBMB
Gene Name(s): HypF TTE0131
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Hydrogenase maturation factor C, D 314 Caldanaerobacter subterraneus Fragment: N-terminal truncated variant, UNP residues 40-351
Gene Name(s): HypE TTE0134
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

A, B FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

C, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.56 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.206
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 118.74 α = 90.00
b = 119.10 β = 90.00
c = 174.63 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-30
  • Released Date: 2012-07-04
  • Deposition author(s): Shomura, Y., Higuchi, Y.

Revision History

  • Version 1_0: 2012-07-04

    Type: Initial release

  • Version 1_1: 2013-08-07

    Type: Database references