3VSV

The complex structure of XylC with xylose

Structural Biology Knowledgebase: 3VSV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.48 Å
  • R-Value Free: 0.168
  • R-Value Work: 0.150

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VSV

Classification: HYDROLASE

Total Structure Weight: 296638.99

Macromolecule Entities
Molecule Chains Length Organism Details
Xylosidase A, B, C, D 638 Thermoanaerobacterium saccharolyticum EC#: 3.2.1.37 IUBMB
Gene Name(s): Tsac_0939

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
XYP
Query on XYP

A, B, C, D BETA-D-XYLOPYRANOSE
C5 H10 O5
SRBFZHDQGSBBOR-KKQCNMDGSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
XYS
Query on XYS

A, B, C, D XYLOPYRANOSE
C5 H10 O5
SRBFZHDQGSBBOR-LECHCGJUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.48 Å
  • R-Value Free: 0.168
  • R-Value Work: 0.150
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 88.78 α = 90.00
b = 201.95 β = 99.18
c = 100.11 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-09
  • Released Date: 2013-02-27
  • Deposition author(s): Huang, C.H., Sun, Y., Ko, T.P., Ma, Y., Chen, C.C., Zheng, Y., Chan, H.C., Pang, X., Wiegel, J., Shao, W., Guo, R.T.

Revision History

No revisions since initial release