3VPC

ArgX from Sulfolobus tokodaii complexed with ADP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.87 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 3VPC

Classification: LIGASE

Total Structure Weight: 127998.44

Macromolecule Entities
Molecule Chains Length Organism Details
Putative acetylornithine deacetylase A, B, C, D 282 Sulfolobus tokodaii EC#: 6.3.2 IUBMB
Gene Name(s): argE argX STK_15050
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B, C, D ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.87 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.198
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 63.27 α = 87.77
b = 67.85 β = 75.29
c = 80.03 γ = 67.03

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-29
  • Released Date: 2013-02-27
  • Deposition author(s): Tomita, T., Horie, A., Kuzuyama, T., Nishiyama, M.

Revision History

  • Version 1_0: 2013-02-27

    Type: Initial release

  • Version 1_1: 2013-07-31

    Type: Database references