3VK9

Crystal structure of delta-class glutathione transferase from silkmoth


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.191 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis for catalytic activity of a silkworm Delta-class glutathione transferase

Yamamoto, K.Usuda, K.Kakuta, Y.Kimura, M.Higashiura, A.Nakagawa, A.Aso, Y.Suzuki, M.

(2012) Biochim Biophys Acta 1820: 1469-1474

  • DOI: https://doi.org/10.1016/j.bbagen.2012.04.022
  • Primary Citation of Related Structures:  
    3VK9

  • PubMed Abstract: 

    Glutathione transferase (GST) catalyzes glutathione conjugation, a major detoxification pathway for xenobiotics and endogenous substances. Here, we determined the crystal structure of a Delta-class GST from Bombyx mori (bmGSTD) to examine its catalytic residues.


  • Organizational Affiliation

    Faculty of Agriculture, Kyushu University Graduate School, 6-10-1 Hakozaki, Higashi-ku, Fukuoka 812-8581, Japan. yamamok@agr.kyushu-u.ac.jp


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Glutathione S-transferase delta
A, B, C, D
216Bombyx moriMutation(s): 0 
Gene Names: GST delta
EC: 2.5.1.18
UniProt
Find proteins for Q60GK5 (Bombyx mori)
Explore Q60GK5 
Go to UniProtKB:  Q60GK5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ60GK5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.191 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 128.393α = 90
b = 162.184β = 90
c = 86.791γ = 90
Software Package:
Software NamePurpose
BSSdata collection
MOLREPphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-10-03
    Type: Initial release
  • Version 1.1: 2024-03-20
    Changes: Data collection, Database references, Derived calculations