3VHS

Crystal structure of UBZ of human WRNIP1

Structural Biology Knowledgebase: 3VHS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.213

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3VHS

Classification: METAL BINDING PROTEIN

Total Structure Weight: 6664.28

Macromolecule Entities
Molecule Chains Length Organism Details
ATPase WRNIP1 A, B 29 Homo sapiens EC#: 3.6.1.3 IUBMB
Fragment: UBIQUITIN-BINDING ZINC FINGER DOMAIN (UNP RESIDUES 17-40)
Gene Name(s): WRNIP1 Gene View WHIP

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.213
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 36.48 α = 90.00
b = 73.46 β = 90.00
c = 34.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-09-06
  • Released Date: 2012-10-10
  • Deposition author(s): Suzuki, N., Wakatsuki, S., Kawasaki, M.

Revision History

  • 2016-06-01
    Type: Citation | Details: Citation update