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Structure of U2AF65 variant with BrU5C1 DNA
DOI:10.2210/pdb3val/pdb   NDB ID: NA1536
3VAL
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA Binding Protein/dna
    Structure Weight: 85969.22
    Molecule: Splicing factor U2AF 65 kDa subunit
    Polymer: 1 Type: protein Length: 174
    Chains: A, B, D, I
    Fragment: RNA Binding Domains 1 and 2
    Organism Homo sapiens
    Gene Names U2AF2 U2AF65
    UniProtKB:   Protein Feature View | Search PDB | P26368  
    Molecule: DNA (5'-D(*C*UP*UP*UP*(BRU)P*UP*U)-3')
    Polymer: 2 Type: dna Length: 7
    Chains: E, H, K, P
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    2G4B  U2AF65 variant with polyuridine tract 
    2HZC  N-terminal RRM of U2AF65 
    3VAF   
    3VAG   
    3VAH   
    3VAI   
    3VAJ   
    3VAK   
    3VAM   
    3VAN   
    3VAO   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    DIO
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    DIO C4 H8 O2
    1,4-DIETHYLENE DIOXIDE
    SO4
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    SO4 O4 S
    SULFATE ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    BRU
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    BRU C9 H12 Br N2 O8 P DU dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA1536
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Jenkins, J.L.,  Frato, K.H.,  Kielkopf, C.L.

    Deposition:   2011-12-29
    Release:   2013-02-13
    Last Modified (REVDAT):   2013-05-22
     
  •   Revision History    Hide
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    2013-05-22
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.50
    R-Value: 0.208 (work)
    R-Free: 0.271
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 37.58 α = 90.00 
    b = 137.08 β = 102.97 
    c = 83.96 γ = 90.00