3VAL

Structure of U2AF65 variant with BrU5C1 DNA

Structural Biology Knowledgebase: 3VAL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 3VAL

Classification: RNA BINDING PROTEIN / DNA

Total Structure Weight: 85969.21


Macromolecule Entities
Molecule Chains Length Organism Details
Splicing factor U2AF 65 kDa subunit A, B, D, I 174 Homo sapiens Fragment: RNA Binding Domains 1 and 2
Gene Name(s): U2AF2 Gene View U2AF65
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*C*UP*UP*UP*(BRU)P*UP*U)-3') E, H, K, P 7 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, D, H, I SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DIO
Query on DIO

A, B, D, I 1,4-DIETHYLENE DIOXIDE
C4 H8 O2
RYHBNJHYFVUHQT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
BRU
Query on BRU
E, H, K, P DNA LINKING C9 H12 Br N2 O8 P DU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.208
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 37.58 α = 90.00
b = 137.08 β = 102.97
c = 83.96 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-29
  • Released Date: 2013-02-13
  • Deposition author(s): Jenkins, J.L., Frato, K.H., Kielkopf, C.L.

Revision History

  • 2013-05-22
    Type: Citation | Details: Citation update