Structure of U2AF65 variant with BrU5 DNA DOI:10.2210/pdb3vak/pdb   NDB ID: NA1535

3VAK   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: RNA Binding Protein/dna Structure Weight: 44625.42 Molecule: Splicing factor U2AF 65 kDa subunit Polymer: 1 Type: protein Length: 174 Chains: A, B Fragment: RNA Binding Domains 1 and 2 Organism Homo sapiens Gene Names U2AF2 U2AF65 UniProtKB:   Protein Feature View | Search PDB | P26368     Molecule: DNA (5'-D(*UP*UP*UP*UP*(BRU)P*UP*U)-3') Polymer: 2 Type: dna Length: 7 Chains: E, P Organism synthetic construct     Source Hide Polymer: 1 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli   Polymer: 2 Scientific Name: Synthetic construct (synthetic construct)   Taxonomy         Related PDB Entries Hide Identifier Details 2G4B  U2AF65 variant with polyuridine tract  2HZC  N-terminal RRM of U2AF65  3VAF    3VAG    3VAH    3VAI    3VAJ    3VAL    3VAM    3VAN    3VAO        Ligand Chemical Component Hide Identifier Formula Name Interactions CPQ Search  Download  C42 H75 N3 O15 N,N-BIS(3-D-GLUCONAMIDOPROPYL)DEOXYCHOLAMIDE   Ligand Explorer DIO Search  Download  C4 H8 O2 1,4-DIETHYLENE DIOXIDE   Ligand Explorer GOL Search  Download  C3 H8 O3 GLYCEROL   Ligand Explorer SO4 Search  Download  O4 S SULFATE ION   Ligand Explorer     Modified Residues Hide Identifier Formula Parent Type BRU Search  C9 H12 Br N2 O8 P DU dnaLinking     External Domain Annotations Hide Pfam Classification: 3 Domains - data from Pfam       Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: NA1535     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Jenkins, J.L.,  Kielkopf, C.L. Deposition:   2011-12-29 Release:   2013-02-13 Last Modified (REVDAT):   2013-05-22     Revision History    Hide Mouse over text for details 2013-05-22 Citation     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.17 R-Value: 0.192 (obs.) R-Free: 0.229 Space Group: C 2 Unit Cell:   Length [Å] Angles [°] a = 166.41 α = 90.00  b = 37.73 β = 125.43  c = 101.63 γ = 90.00