Crystal structure of RNase T in complex with a duplex DNA product (stem loop DNA with 2 nucleotide 3' overhang)
DOI:10.2210/pdb3va3/pdb   NDB ID: NA1526
3VA3
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 62361.20
    Molecule: Ribonuclease T
    Polymer: 1 Type: protein Length: 235
    Chains: A, B
    EC#: 3.1.13   
    Mutation: E92G
    Organism: Escherichia coli K-12
    Gene Names: rnt b1652 JW1644
    UniProtKB: Protein Feature View | Search PDB | P30014  
    Molecule: DNA (5'-D(*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3')
    Polymer: 2 Type: dna Length: 18
    Chains: C, D
     
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  • MolProbity Ramachandran Plot
     

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  •   Source Hide
    Polymer: 1
    Scientific Name: Escherichia coli   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3NGY    
    3NGZ    
    3NH0    
    3NH1    
    3NH2    
    3V9S    
    3V9U    
    3V9W    
    3V9X    
    3V9Z    
    3VA0    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CO
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    CO Co
    COBALT (II) ION
     
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA1526
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Hsiao, Y.-Y.,  Yuan, H.S.

    Deposition:   2011-12-28
    Release:   2012-07-11
    Last Modified (REVDAT):   2013-06-26
     
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    2013-06-26
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.71
    R-Value: 0.265 (obs.)
    R-Free: 0.290
    Space Group: P 21 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 100.27 α = 90.00 
    b = 112.68 β = 90.00 
    c = 57.79 γ = 90.00