3V6O

Leptin Receptor-antibody complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.171

Literature

Macromolecules
Sequence Display for 3V6O

Classification: IMMUNE SYSTEM

Total Structure Weight: 144456.20

Macromolecule Entities
Molecule Chains Length Organism Details
Leptin receptor A, B 206 Homo sapiens Fragment: Leptin binding domain of human obesity receptor
Gene Name(s): LEPR Gene View DB OBR
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Monoclonal antibody 9F8 fab fragment Heavy chain C, D 221 Mus musculus Fragment: Fab fragment of monoclonal antibody H chain
Monoclonal antibody 9F8 fab fragment Light chain E, F 215 Mus musculus Fragment: Fab fragment of monoclonal antibody L chain

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

F N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CYS
Query on CYS

A, B CYSTEINE
C3 H7 N O2 S
XUJNEKJLAYXESH-REOHCLBHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B, C, D, E, F 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

C, D, E, F ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

C SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.171
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 89.81 α = 90.00
b = 118.83 β = 90.00
c = 171.28 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-20
  • Released Date: 2012-03-14
  • Deposition author(s): Carpenter, B., Hemsworth, G.R., Ross, R.J., Artymiuk, P.J.

Revision History

  • 2012-04-25
    Type: Database references