3V52

Structure of a monoclonal antibody complexed with its MHC-I antigen


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.197

Literature

Macromolecules
Sequence Display for 3V52

Classification: IMMUNE SYSTEM

Total Structure Weight: 48180.65

Macromolecule Entities
Molecule Chains Length Organism Details
ANTI-MHC-I MONOCLONAL ANTIBODY, 64-3-7 H CHAIN H 216 Mus musculus
ANTI-MHC-I MONOCLONAL ANTIBODY, 64-3-7 L CHAIN L 218 Mus musculus Gene Name(s): Igkc Igk-C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
H-2 class I histocompatibility antigen, L-D alpha chain P 8 Mus musculus Fragment: H-2Ld peptide p46-53
Gene Name(s): H2-L
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

L 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.197
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 193.52 α = 90.00
b = 40.42 β = 102.74
c = 59.26 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-12-15
  • Released Date: 2012-07-25
  • Deposition author(s): Mage, M.G., Dolan, M.A., Wang, R., Boyd, L.F., Revilleza, M.J., Robinson, H., Natarajan, K., Myers, N.B., Hansen, T.H., Margulies, D.H.

Revision History

  • 2012-08-01
    Type: Database references