3ULV

Structure of quaternary complex of human TLR3ecd with three Fabs (Form2)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.52 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.231

Literature

Macromolecules
Sequence Display for 3ULV

Classification: IMMUNE SYSTEM

Total Structure Weight: 226202.52

Macromolecule Entities
Molecule Chains Length Organism Details
Toll-like receptor 3 A 694 Homo sapiens Fragment: UNP residues 22-702
Gene Name(s): TLR3 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Fab15 light chain L 214 Homo sapiens
Fab15 heavy chain H 225 Homo sapiens
Fab12 light chain C 213 Homo sapiens
Fab12 heavy chain D 226 Homo sapiens
Fab1068 light chain E 215 Homo sapiens
Fab1068 heavy chain F 223 Homo sapiens

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, E SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.52 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.231
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 363.30 α = 90.00
b = 131.66 β = 91.35
c = 154.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-11
  • Released Date: 2012-05-23
  • Deposition author(s): Luo, J., Gilliland, G.L., Obmolova, O., Malia, T., Teplyakov, A.

Revision History

  • Version 1_0: 2012-05-23

    Type: Initial release

  • Version 1_1: 2012-05-30

    Type: Database references

  • Version 1_2: 2012-07-25

    Type: Database references