3UEL

Crystal structure of the catalytic domain of rat poly (ADP-ribose) glycohydrolase bound to ADP-HPD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.245

Literature

Macromolecules
Sequence Display for 3UEL

Classification: HYDROLASE

Total Structure Weight: 204967.47

Macromolecule Entities
Molecule Chains Length Organism Details
Poly(ADP-ribose) glycohydrolase A, B, C 588 Rattus norvegicus EC#: 3.2.1.143 IUBMB
Fragment: UNP residues 385-972
Gene Name(s): Parg
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
A1R
Query on A1R

A, B, C 5'-O-[(S)-{[(S)-{[(2R,3R,4S)-3,4-DIHYDROXYPYRROLIDIN- 2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]ADENOSINE
C15 H24 N6 O12 P2
NDQDTBCXPOIQGT-UHNJQBFTSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
A1R IC50: 100 - 1400 nM (90 - 100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.245
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 130.77 α = 90.00
b = 195.99 β = 90.00
c = 163.45 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-10-30
  • Released Date: 2012-05-23
  • Deposition author(s): Kim, I.K., Kiefer, J.R., Stegemann, R.A., Classen, S., Tainer, J.A., Ellenberger, T.

Revision History

  • Version 1_0: 2012-05-23

    Type: Initial release

  • Version 1_1: 2012-07-18

    Type: Database references