3UBR

Laue structure of Shewanella oneidensis cytochrome-c Nitrite Reductase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.59 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 3UBR

Classification: OXIDOREDUCTASE

Total Structure Weight: 105400.02

Macromolecule Entities
Molecule Chains Length Organism Details
Cytochrome c-552 A, B 439 Shewanella oneidensis EC#: 1.7.2.2 IUBMB
Gene Name(s): nrfA SO_3980
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEC
Query on HEC

A, B HEME C
C34 H34 Fe N4 O4
HXQIYSLZKNYNMH-LJNAALQVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.59 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.190
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 51.50 α = 90.00
b = 95.90 β = 90.00
c = 223.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-10-24
  • Released Date: 2012-04-25
  • Deposition author(s): Youngblut, M., Judd, E.T., Srajer, V., Sayed, B., Goeltzner, T., Elliott, S., Schmidt, M., Pacheco, A.

Revision History

  • 2012-06-20
    Type: Database references
  • 2017-03-15
    Type: Other