RCSB Protein Data Bank - RCSB PDB - 3U4E Structure Summary

This browser is either not Javascript enabled or has it turned off.
This site will not function correctly without Javascript.

Crystal Structure of PG9 Fab in Complex with V1V2 Region from HIV-1 strain CAP45

DOI:10.2210/pdb3u4e/pdb

3U4E

Display Files

FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)

Download Files

FASTA Sequence
PDB File (Text)
PDB File (gz)
mmCIF File
mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)

Share this Page

Facebook Twitter LinkedIn Email

Link this Page

Primary Citation

Related Citations in PDB Entry (REMARK 1) Hide

Molecular Description

Hide

Classification:	Immune System
Structure Weight:	132968.79

Molecule:

V1V2 region of HIV-1 on 1FD6 scaffold

Polymer:

Type:

protein

Length:

124

Chains:

G, J

Organism

Human immunodeficiency virus 1

Gene Name

env

UniProtKB:

| | Q1PHM9

Molecule:

PG9 Heavy Chain

Polymer:

Type:

protein

Length:

248

Chains:

A, H

Organism

Homo sapiens

Molecule:

PG9 Light Chain

Polymer:

Type:

protein

Length:

216

Chains:

B, L

Organism

Homo sapiens

Source

Hide

Polymer: 1

Scientific Name:

Human immunodeficiency virus 1

Taxonomy

Expression System:

Homo sapiens

Polymer: 2

Scientific Name:

Homo sapiens

Taxonomy

Common Name:

Human

Expression System:

Homo sapiens

Polymer: 3

Scientific Name:

Homo sapiens

Taxonomy

Common Name:

Human

Expression System:

Homo sapiens

Polymer: 4

Scientific Name:

Synthetic construct

Taxonomy

Polymer: 5

Scientific Name:

Synthetic construct

Taxonomy

Polymer: 7

Scientific Name:

Synthetic construct

Taxonomy

Polymer: 8

Scientific Name:

Synthetic construct

Taxonomy

Related PDB Entries

Hide

Identifier	Details
3U2S
3U46
3U4B

Ligand Chemical Component

Hide

Identifier	Formula	Name	Interactions
BMA Search Download	C₆ H₁₂ O₆	BETA-D-MANNOSE		Ligand Explorer
MAN Search Download	C₆ H₁₂ O₆	ALPHA-D-MANNOSE		Ligand Explorer
NAG Search Download	C₈ H₁₅ N O₆	N-ACETYL-D-GLUCOSAMINE		Ligand Explorer
SO4 Search Download	O₄ S	SULFATE ION		Ligand Explorer

Modified Residues

Hide

Identifier	Formula	Parent	Type
PCA Search	C₅ H₇ N O₃	GLU	lPeptideLinking
TYS Search	C₉ H₁₁ N O₆ S	TYR	lPeptideLinking

External Domain Annotations Hide
Pfam Classification: 12 Domains - data from Pfam
Structural Biology Knowledgebase Data Hide

Data in orange boxes are gathered from external resources (when available).

Reset Layout

Biological Assembly 1

View in 3D

More Images...

Biological assembly 1 assigned by authors

Downloadable viewers:

MyPDB Personal Annotations Hide

Deposition Summary

Hide

Authors: Gorman, J., McLellan, J., Pancera, M., Kwong, P.D.

Deposition:	2011-10-07
Release:	2011-11-30
Last Modified (REVDAT):	2011-12-21

Revision History Hide

Mouse over text for details

2011-12-21
Citation

Experimental Details

Hide

Method: X-RAY DIFFRACTION
Exp. Data:
Structure Factors
EDS

Unit Cell:
	Length [Å]	Angles [°]
	a = 73.03	α = 90.00
	b = 103.54	β = 90.00
	c = 186.37	γ = 90.00

Molecule of the Month Hide
Epidermal Growth Factor

Nanobodies

Antibodies

Hemagglutinin