RCSB Protein Data Bank - RCSB PDB - 3U2S Structure Summary

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Crystal Structure of PG9 Fab in Complex with V1V2 Region from HIV-1 strain ZM109

DOI:10.2210/pdb3u2s/pdb

3U2S

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Primary Citation

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Molecular Description

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Classification:	Immune System
Structure Weight:	130614.78

Molecule:

PG9 heavy chain

Polymer:

Type:

protein

Length:

248

Chains:

A, H

Fragment:

antigen-binding fragment

Organism

Homo sapiens

Molecule:

PG9 light chain

Polymer:

Type:

protein

Length:

216

Chains:

B, L

Organism

Homo sapiens

Molecule:

Envelope glycoprotein gp120

Polymer:

Type:

protein

Length:

124

Chains:

C, G

Fragment:

V1V2 region

Organism

Human immunodeficiency virus 1

Gene Name

env

UniProtKB:

| | Q6TCP8

Source

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Polymer: 1

Scientific Name:

Homo sapiens

Taxonomy

Common Name:

Human

Expression System:

Homo sapiens

Polymer: 2

Scientific Name:

Homo sapiens

Taxonomy

Common Name:

Human

Expression System:

Homo sapiens

Polymer: 3

Scientific Name:

Human immunodeficiency virus 1

Taxonomy

Expression System:

Homo sapiens

Polymer: 6

Scientific Name:

Synthetic construct

Taxonomy

Related PDB Entries Hide

Identifier Details

3U36

Ligand Chemical Component

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Identifier	Formula	Name	Interactions
BMA Search Download	C₆ H₁₂ O₆	BETA-D-MANNOSE		Ligand Explorer
BU3 Search Download	C₄ H₁₀ O₂	(R,R)-2,3-BUTANEDIOL		Ligand Explorer
MAN Search Download	C₆ H₁₂ O₆	ALPHA-D-MANNOSE		Ligand Explorer
NAG Search Download	C₈ H₁₅ N O₆	N-ACETYL-D-GLUCOSAMINE		Ligand Explorer
SO4 Search Download	O₄ S	SULFATE ION		Ligand Explorer

Modified Residues

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Identifier	Formula	Parent	Type
PCA Search	C₅ H₇ N O₃	GLU	lPeptideLinking
TYS Search	C₉ H₁₁ N O₆ S	TYR	lPeptideLinking

External Domain Annotations Hide
Pfam Classification: 12 Domains - data from Pfam
Structural Biology Knowledgebase Data Hide

Data in orange boxes are gathered from external resources (when available).

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Biological Assembly 1

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Biological assembly 1 assigned by authors

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Deposition Summary

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Authors: McLellan, J.S., Pancera, M., Kwong, P.D.

Deposition:	2011-10-04
Release:	2011-11-30
Last Modified (REVDAT):	2011-12-21

Revision History Hide

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2011-12-21
Citation

Experimental Details

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Method: X-RAY DIFFRACTION
Exp. Data:
Structure Factors
EDS

Unit Cell:
	Length [Å]	Angles [°]
	a = 89.46	α = 90.00
	b = 86.57	β = 92.08
	c = 94.88	γ = 90.00

Molecule of the Month Hide
Epidermal Growth Factor

Nanobodies

Antibodies

Hemagglutinin