3U1P

Crystal Structure of M. tuberculosis LD-transpeptidase type 2 with Modified Catalytic Cysteine (C354)

Structural Biology Knowledgebase: 3U1P SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.187

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3U1P

Classification: PEPTIDOGLYCAN BINDING PROTEIN

Total Structure Weight: 62499.84

Macromolecule Entities
Molecule Chains Length Organism Details
Mycobacteria Tuberculosis LD-transpeptidase type 2 A, B 287 Mycobacterium tuberculosis EC#: 2.3.2 IUBMB
Gene Name(s): ldtB MT2594 V735_02606

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PEG
Query on PEG

A, B DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSO
Query on CSO
A, B L-PEPTIDE LINKING C3 H7 N O3 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.187
  • Space Group: I 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 119.04 α = 90.00
b = 121.22 β = 90.00
c = 122.88 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-09-30
  • Released Date: 2012-12-05
  • Deposition author(s): Erdemli, S., Bianchet, M.A., Gupta, R., Lamichhane, G., Amzel, L.M.

Revision History

  • 2012-12-26
    Type: Citation | Details: Citation update
  • 2012-12-12
    Type: Citation | Details: Citation update