Crystal structure of broadly and potently neutralizing antibody VRC03 in complex with HIV-1 gp120 DOI:10.2210/pdb3se8/pdb

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Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Viral Protein/immune System Structure Weight: 91101.55 Molecule: HIV-1 Clade AE strain 93TH057 gp120 Polymer: 1 Type: protein Length: 353 Chains: G Fragment: Core gp120 with truncations Organism Human immunodeficiency virus 1 Gene Name env UniProtKB:   Protein Feature View | Search PDB | Q0ED31     Molecule: Heavy chain of antibody VRC03 Polymer: 2 Type: protein Length: 233 Chains: H Fragment: Antigen binding fragement of antibody heavy chain Organism Homo sapiens Molecule: Light chain of antibody VRC03 Polymer: 3 Type: protein Length: 209 Chains: L Fragment: antibody light chain Organism Homo sapiens     Source Hide Polymer: 1 Scientific Name: Human immunodeficiency virus 1   Taxonomy   Expression System: Homo sapiens   Polymer: 2 Scientific Name: Homo sapiens   Taxonomy   Expression System: Homo sapiens   Polymer: 3 Scientific Name: Homo sapiens   Taxonomy   Expression System: Homo sapiens       Related PDB Entries Hide Identifier Details 3NGB  Antibody VRC01 isolated from the same donor      Ligand Chemical Component Hide Identifier Formula Name Interactions EDO Search  Download  C2 H6 O2 1,2-ETHANEDIOL   Ligand Explorer NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer SO4 Search  Download  O4 S SULFATE ION   Ligand Explorer TRS Search  Download  C4 H12 N O3 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL   Ligand Explorer     External Domain Annotations Hide Pfam Classification: 10 Domains - data from Pfam       Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Kwong, P.D.,  Zhou, T. Deposition:   2011-06-10 Release:   2011-08-10 Last Modified (REVDAT):   2012-08-15     Revision History    Hide Mouse over text for details 2012-08-15 Other 2011-10-05 Citation     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.89 R-Value: 0.189 (obs.) R-Free: 0.233 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 62.01 α = 90.00  b = 70.26 β = 90.00  c = 217.88 γ = 90.00      Molecule of the Month Hide Epidermal Growth Factor Nanobodies Antibodies Hemagglutinin