3S6Z
Structure of reovirus attachment protein sigma1 in complex with alpha-2,8-disialyllactose
- PDB DOI: https://doi.org/10.2210/pdb3S6Z/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Mammalian orthoreovirus 3 Dearing
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes 
- Deposited: 2011-05-26 Released: 2011-11-23 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.28 Å
- R-Value Free: 0.219 
- R-Value Work: 0.173 
- R-Value Observed: 0.175 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Outer capsid protein sigma-1 | 325 | Mammalian orthoreovirus 3 Dearing | Mutation(s): 1  Gene Names: S1 | ||
UniProt | |||||
Find proteins for P03528 (Reovirus type 3 (strain Dearing)) Explore P03528  Go to UniProtKB:  P03528 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P03528 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.28 Å
- R-Value Free: 0.219 
- R-Value Work: 0.173 
- R-Value Observed: 0.175 
- Space Group: P 21 21 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 87.15 | α = 90 |
b = 333.18 | β = 90 |
c = 58.49 | γ = 90 |
Software Name | Purpose |
---|---|
XSCALE | data scaling |
AMoRE | phasing |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
XDS | data scaling |
XDS | data reduction |
Entry History 
Deposition Data
- Released Date: 2011-11-23  Deposition Author(s): Reiter, D.M., Dermody, T.S., Stehle, T.
Revision History (Full details and data files)
- Version 1.0: 2011-11-23
Type: Initial release - Version 1.1: 2018-01-24
Changes: Structure summary - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Structure summary - Version 2.1: 2024-02-28
Changes: Data collection, Database references, Structure summary