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Schizosaccaromyces pombe 3-methyladenine DNA glycosylase (Mag1) in complex with abasic-DNA.
DOI:10.2210/pdb3s6i/pdb   NDB ID: NA1156
3S6I
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 66040.10
    Molecule: DNA-3-methyladenine glycosylase 1
    Polymer: 1 Type: protein Length: 228
    Chains: A, D
    EC#: 3.2.2.21   
    Organism Schizosaccharomyces pombe 972h-
    Gene Names mag1 SPAPB24D3.04c
    UniProtKB:   Protein Feature View | Search PDB | Q92383  
    Molecule: (5'-D(*TP*GP*TP*CP*CP*AP*(3DR)P*GP*TP*CP*T)-3')
    Polymer: 2 Type: dna Length: 11
    Chains: B, E
    Molecule: (5'-D(*AP*AP*GP*AP*CP*TP*TP*GP*GP*AP*C)-3')
    Polymer: 3 Type: dna Length: 11
    Chains: C, F
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Schizosaccharomyces pombe   Taxonomy   Common Name: Fission yeast Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    NA
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    NA Na
    SODIUM ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    3DR
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    3DR C5 H11 O6 P dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA1156
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Adhikary, S.,  Eichman, B.F.

    Deposition:   2011-05-25
    Release:   2011-12-14
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.28
    R-Value: 0.187 (obs.)
    R-Free: 0.225
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 54.32 α = 90.00 
    b = 112.30 β = 99.55 
    c = 61.11 γ = 90.00