3S26
Crystal Structure of Murine Siderocalin (Lipocalin 2, 24p3)
- PDB DOI: https://doi.org/10.2210/pdb3S26/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Mus musculus
- Expression System: Homo sapiens
- Mutation(s): No 
- Deposited: 2011-05-16 Released: 2011-09-28 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.226 
- R-Value Work: 0.201 
- R-Value Observed: 0.202 
wwPDB Validation   3D Report Full Report
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Neutrophil gelatinase-associated lipocalin | 190 | Mus musculus | Mutation(s): 0  Gene Names: Lcn2 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P11672 (Mus musculus) Explore P11672  Go to UniProtKB:  P11672 | |||||
IMPC:  MGI:96757 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P11672 | ||||
Sequence AnnotationsExpand | |||||
|
Oligosaccharides
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | B | 4 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G81315DD GlyCosmos:  G81315DD GlyGen:  G81315DD |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.226 
- R-Value Work: 0.201 
- R-Value Observed: 0.202 
- Space Group: P 21 21 21
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 42.89 | α = 90 |
b = 43.96 | β = 90 |
c = 101.92 | γ = 90 |
Software Name | Purpose |
---|---|
d*TREK | data reduction |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
ADSC | data collection |
d*TREK | data scaling |
PHASER | phasing |
Entry History 
Deposition Data
- Released Date: 2011-09-28  Deposition Author(s): Correnti, C., Bandaranayake, A.D., Strong, R.K.
Revision History (Full details and data files)
- Version 1.0: 2011-09-28
Type: Initial release - Version 1.1: 2011-12-07
Changes: Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Structure summary - Version 2.1: 2021-03-31
Changes: Source and taxonomy, Structure summary