3RY4
1.5 Angstrom resolution structure of glycosylated fcgammariia (low-responder polymorphism)
- PDB DOI: https://doi.org/10.2210/pdb3RY4/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Homo sapiens
- Expression System: Spodoptera frugiperda
- Mutation(s): Yes 
- Deposited: 2011-05-11 Released: 2011-08-31 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.230 
- R-Value Work: 0.203 
- R-Value Observed: 0.203 
This is version 1.3 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Low affinity immunoglobulin gamma Fc region receptor II-a | 170 | Homo sapiens | Mutation(s): 1  Gene Names: CD32, FCG2, FCGR2A, FCGR2A1, IGFR2 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P12318 (Homo sapiens) Explore P12318  Go to UniProtKB:  P12318 | |||||
PHAROS:  P12318 GTEx:  ENSG00000143226  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P12318 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | B [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
GOL Query on GOL | C [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.230 
- R-Value Work: 0.203 
- R-Value Observed: 0.203 
- Space Group: P 21 21 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 79.343 | α = 90 |
b = 100.407 | β = 90 |
c = 27.937 | γ = 90 |
Software Name | Purpose |
---|---|
CNS | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |
CNS | phasing |
Entry History 
Deposition Data
- Released Date: 2011-08-31  Deposition Author(s): Ramsland, P.A., Farrugia, W., Hogarth, P.M.
Revision History (Full details and data files)
- Version 1.0: 2011-08-31
Type: Initial release - Version 1.1: 2011-09-21
Changes: Database references - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Structure summary - Version 1.3: 2023-09-13
Changes: Data collection, Database references, Refinement description, Structure summary