3RVV

Crystal structure of Der f 1 complexed with Fab 4C1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.196
  • R-Value Work: 0.150

Literature

Macromolecules
Sequence Display for 3RVV

Classification: Hydrolase / IMMUNE SYSTEM

Total Structure Weight: 77340.47

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidase 1 A 223 Dermatophagoides farinae EC#: 3.4.22.65 IUBMB
Fragment: unp residues 99-321
Gene Name(s): DERF1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
4C1 - light chain C 213 Mus musculus
4C1 - heavy chain D 255 Mus musculus

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, C 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.196
  • R-Value Work: 0.150
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 65.40 α = 90.00
b = 79.43 β = 105.20
c = 72.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-05-06
  • Released Date: 2012-01-11
  • Deposition author(s): Chruszcz, M., Vailes, L.D., Chapman, M.D., Pomes, A., Minor, W.

Revision History

  • 2012-05-23
    Type: Database references