New strategy to analyze structures of glycopeptide antibiotic-target complexes DOI:10.2210/pdb3rum/pdb

3RUM   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Sugar Binding Protein/antibiotic Structure Weight: 46510.12 Molecule: Maltose-binding periplasmic protein Polymer: 1 Type: protein Length: 378 Chains: A Fragment: UNP RESIDUES 27-392 Organism Escherichia coli K-12 Gene Names malE b4034 JW3994 UniProtKB:   Protein Feature View | Search PDB | P0AEX9     Molecule: Ristocetin Polymer: 2 Type: protein Length: 7 Chains: B, C Organism Amycolatopsis lurida     Source Hide Polymer: 1 Scientific Name: Escherichia coli k-12   Taxonomy   Expression System: Escherichia coli   Polymer: 2 Scientific Name: Amycolatopsis lurida   Taxonomy     Polymer: 6 Scientific Name: Synthetic construct   Taxonomy         Related PDB Entries Hide Identifier Details 1ANF  MALTODEXTRIN BINDING PROTEIN WITH BOUND MALTOSE  3RUL    3RUN    3VFJ    3VFK        Ligand Chemical Component Hide Identifier Formula Name Interactions BGC Search  Download  C6 H12 O6 BETA-D-GLUCOSE   Ligand Explorer BXY Search  Download  C5 H10 O5 alpha-D-arabinofuranose   Ligand Explorer IPA Search  Download  C3 H8 O ISOPROPYL ALCOHOL   Ligand Explorer MAL Search  Download  C12 H22 O11 MALTOSE   Ligand Explorer MAN Search  Download  C6 H12 O6 ALPHA-D-MANNOSE   Ligand Explorer RAM Search  Download  C6 H12 O5 ALPHA-L-RHAMNOSE   Ligand Explorer RST Search  Download  C6 H13 N O3 RISTOSAMINE   Ligand Explorer SO4 Search  Download  O4 S SULFATE ION   Ligand Explorer     Modified Residues Hide Identifier Formula Parent Type CCS Search  C5 H9 N O4 S CYS lPeptideLinking DAL Search  C3 H7 N O2 dPeptideLinking GHP Search  C8 H9 N O3 dPeptideLinking HTY Search  C9 H11 N O4 dPeptideLinking MP4 Search  C9 H11 N O4 lPeptideLinking OMX Search  C9 H11 N O4 TYR lPeptideLinking MDF Search  C9 H11 N O4 TYR lPeptideLinking     External Domain Annotations Hide Pfam Classification: 3 Domains - data from Pfam   GO Terms: 10 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Economou, N.J.,  Weeks, S.D.,  Grasty, K.C.,  Nahoum, V.,  Loll, P.J. Deposition:   2011-05-05 Release:   2012-06-06     Revision History    Hide No revisions since initial release     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.85 R-Value: 0.178 (obs.) R-Free: 0.219 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 57.83 α = 90.00  b = 75.00 β = 90.00  c = 90.78 γ = 90.00