3RU8

Structure of an HIV epitope scaffold in complex with neutralizing antibody b12 Fab

Structural Biology Knowledgebase: 3RU8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.07 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.168

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3RU8

Classification: DE NOVO PROTEIN IMMUNE SYSTEM

Total Structure Weight: 79058.46

Macromolecule Entities
Molecule Chains Length Organism Details
Epitope Scaffold 2bodx43 X 282 Thermobifida fusca Human immunodeficiency virus Synthetic construct
Antibody b12, Heavy Chain H 230 Homo sapiens
Antibody b12, Light Chain L 215 Homo sapiens Gene Name(s): IGKC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

L, X GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.07 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.168
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 90.45 α = 90.00
b = 93.10 β = 90.00
c = 94.37 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-05-04
  • Released Date: 2011-11-02
  • Deposition author(s): Carrico, C.T.D., Strong, R.K.

Revision History

  • 2012-02-22
    Type: Citation | Details: Citation update