3RPV

CDK2 in complex with inhibitor RC-2-88

Structural Biology Knowledgebase: 3RPV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.204

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3RPV

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 35213.19

Macromolecule Entities
Molecule Chains Length Organism Details
Cyclin-dependent kinase 2 A 306 Homo sapiens EC#: 2.7.11.22 IUBMB
Gene Name(s): CDK2 Gene View CDKN2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
26Z
Query on 26Z

A 4-{[4-amino-5-(3-aminobenzoyl)-1,3-thiazol- 2-yl]amino}benzenesulfonamide
C16 H15 N5 O3 S2
XNRIWHPUEZHUFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
26Z N/A in BindingDB
N/A in BindingMoad
IC50: 70 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.204
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.63 α = 90.00
b = 71.50 β = 90.00
c = 72.51 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-04-27
  • Released Date: 2012-10-31
  • Deposition author(s): Betzi, S., Alam, R., Han, H., Becker, A., Schonbrunn, E.

Revision History

  • 2013-06-05
    Type: Citation | Details: Citation update
  • 2013-05-15
    Type: Citation | Details: Citation update