3RMC

Crystal Structure of a replicative DNA polymerase bound to DNA containing Thymine Glycol

Structural Biology Knowledgebase: 3RMC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.222

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3RMC

Classification: TRANSFERASE / DNA

Total Structure Weight: 459671.38


Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase A, B, C, D 906 Enterobacteria phage rb69 EC#: 2.7.7.7 IUBMB 3.1.11 IUBMB
Mutation: D222A, D327A
Gene Name(s): 43
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*GP*TP*(CTG)P*GP*AP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3') E, G, I, K 18 synthetic DNA template
DNA (5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*TP*CP*A)-3') F, H, J, L 14 synthetic DNA primer

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CTG
Query on CTG
E, G, I, K DNA LINKING C10 H17 N2 O10 P DT

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.222
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 133.99 α = 90.00
b = 123.77 β = 95.57
c = 163.64 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-04-20
  • Released Date: 2011-08-10
  • Deposition author(s): Aller, P., Duclos, S., Wallace, S.S., Doublie, S.

Revision History

  • 2011-11-02
    Type: Citation | Details: Citation update