Crystal Structure of a replicative DNA polymerase bound to DNA containing Thymine Glycol
DOI:10.2210/pdb3rma/pdb   NDB ID: NA1087
Primary Citation
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 459705.92
    Molecule: DNA polymerase
    Polymer: 1 Type: protein Length: 906
    Chains: A, B, C, D
    Mutation: D222A, D327A
    Organism: Enterobacteria phage RB69
    Gene Name: 43
    UniProtKB: Search PDB | Q38087   Protein Feature View
    Molecule: DNA (5'-D(*CP*GP*AP*(CTG)*GP*AP*AP*TP*GP*AP*CP*AP*GP*CP*CP*GP*CP*G)-3')
    Polymer: 2 Type: dna Length: 18
    Chains: E, G, I, K
    Details: DNA template
    Molecule: DNA (5'-D(*GP*CP*GP*GP*CP*TP*GP*TP*CP*AP*TP*TP*CP*A)-3')
    Polymer: 3 Type: dna Length: 14
    Chains: F, H, J, L
    Details: DNA primer
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  • MolProbity Ramachandran Plot

  •   Related Citations in PDB Entry (REMARK 1) Hide
  •   Source Hide
    Polymer: 1
    Scientific Name: Enterobacteria phage rb69   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
  •   Related PDB Entries Hide
    Identifier Details
  •   Modified Residues Hide
    Identifier Formula Parent Type
    CTG C10 H17 N2 O10 P DT dnaLinking
  •   External Domain Annotations Hide
  •   Structural Biology Knowledgebase Data Hide
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA1087
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Aller, P.,  Duclos, S.,  Wallace, S.S.,  Doublie, S.

    Deposition:   2011-04-20
    Release:   2011-08-10
    Last Modified (REVDAT):   2011-11-02
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  •   Experimental Details Hide
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.84
    R-Value: 0.215 (work)
    R-Free: 0.275
    Space Group: P 1 21 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 132.70 α = 90.00 
    b = 123.00 β = 96.08 
    c = 163.94 γ = 90.00