Structural analysis of an archaeal lipoylation system. A bi-partite lipoate protein ligase and its E2 lipoyl domain from Thermoplasma acidophilum
Posner, M.G., Upadhyay, A., Crennell, S., Danson, M.J., Bagby, S.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Lipoate-protein ligase A subunit 1 | 285 | Thermoplasma acidophilum DSM 1728 | Mutation(s): 0  Gene Names: lplA, Ta0514 EC: 2.7.7.63 | ||
UniProt | |||||
Find proteins for Q9HKT1 (Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)) Explore Q9HKT1  Go to UniProtKB:  Q9HKT1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9HKT1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Putative lipoate-protein ligase A subunit 2 | B [auth C] | 91 | Thermoplasma acidophilum DSM 1728 | Mutation(s): 0  Gene Names: Ta0513, Ta0513m EC: 2.7.7.63 | |
UniProt | |||||
Find proteins for Q9HKT2 (Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)) Explore Q9HKT2  Go to UniProtKB:  Q9HKT2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9HKT2 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MPD Query on MPD | C [auth A], D [auth A] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N | |||
ACT Query on ACT | E [auth A], F [auth C] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
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a = 118.57 | α = 90 |
b = 118.57 | β = 90 |
c = 72.92 | γ = 120 |
Software Name | Purpose |
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ADSC | data collection |
BALBES | phasing |
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |