3QPK
Probing oxygen channels in Melanocarpus albomyces laccase
- PDB DOI: https://doi.org/10.2210/pdb3QPK/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Melanocarpus albomyces
- Expression System: Trichoderma reesei
- Mutation(s): No 
- Deposited: 2011-02-14 Released: 2011-05-11 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.270 
- R-Value Work: 0.214 
- R-Value Observed: 0.217 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Laccase-1 | 559 | Melanocarpus albomyces | Mutation(s): 0  Gene Names: LAC1 EC: 1.10.3.2 | ||
UniProt | |||||
Find proteins for Q70KY3 (Melanocarpus albomyces) Explore Q70KY3  Go to UniProtKB:  Q70KY3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q70KY3 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 5 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | AA [auth B], BA [auth B], CA [auth B], O [auth A], P [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
XE Query on XE | DA [auth B] EA [auth B] FA [auth B] Q [auth A] R [auth A] | XENON Xe FHNFHKCVQCLJFQ-UHFFFAOYSA-N | |||
SO4 Query on SO4 | T [auth A], U [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
CU Query on CU | J [auth A] K [auth A] L [auth A] M [auth A] V [auth B] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N | |||
CL Query on CL | N [auth A], Z [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.270 
- R-Value Work: 0.214 
- R-Value Observed: 0.217 
- Space Group: C 1 2 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 174.15 | α = 90 |
b = 60.2 | β = 99.79 |
c = 114.44 | γ = 90 |
Software Name | Purpose |
---|---|
DNA | data collection |
PHASER | phasing |
PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
Entry History 
Deposition Data
- Released Date: 2011-05-11  Deposition Author(s): Kallio, J.P., Rouvinen, J., Hakulinen, N.
Revision History (Full details and data files)
- Version 1.0: 2011-05-11
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary - Version 2.1: 2023-09-13
Changes: Data collection, Database references, Refinement description, Structure summary