3QLY

Candida glabrata dihydrofolate reductase complexed with NADPH and 6-methyl-5-[3-methyl-3-(3,4,5-trimethoxyphenyl)but-1-yn-1-yl]pyrimidine-2,4-diamine (UCP115A)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.52 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.211

Literature

Macromolecules
Sequence Display for 3QLY

Classification: OXIDOREDUCTASE / OXIDOREDUCTASE INHIBITOR

Total Structure Weight: 55058.35

Macromolecule Entities
Molecule Chains Length Organism Details
Strain CBS138 chromosome J complete sequence A, B 227 [candida] glabrata Gene Name(s): CAGL0J03894g
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDP
Query on NDP

A, B NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
55V
Query on 55V

A, B 6-methyl-5-[3-methyl-3-(3,4,5-trimethoxyphenyl)but- 1-yn-1-yl]pyrimidine-2,4-diamine
2,4-Diamino-5-[3-(3,4,5-trimethoxyphenyl)pent- 1-ynyl]-6-methylpyrimidine (Synonym)
C19 H24 N4 O3
FJNFXXGWYVMQNA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
55V IC50: 11 nM (100) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.52 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.211
  • Space Group: P 41

Unit Cell:

Length (Å) Angle (°)
a = 42.73 α = 90.00
b = 42.73 β = 90.00
c = 230.84 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-02-03
  • Released Date: 2011-07-20
  • Deposition author(s): Paulsen, J.L., Bendel, S.D., Anderson, A.C.

Revision History

  • Version 1_0: 2011-07-20

    Type: Initial release

  • Version 1_1: 2011-09-28

    Type: Database references

  • Version 1_2: 2013-11-20

    Type: Non-polymer description