3QKU

Mre11 Rad50 binding domain in complex with Rad50 and AMP-PNP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.308
  • R-Value Work: 0.258

Literature

Macromolecules
Sequence Display for 3QKU

Classification: REPLICATION

Total Structure Weight: 87250.52

Macromolecule Entities
Molecule Chains Length Organism Details
DNA double-strand break repair rad50 ATPase A, B 359 Pyrococcus furiosus EC#: 3.6 IUBMB
Fragment: UNP residues 1-187, 716-882
Gene Name(s): rad50 PF1167
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA double-strand break repair protein mre11 C 34 Pyrococcus furiosus EC#: 3.1 IUBMB
Fragment: Rad50 binding domain (UNP residues 348-381)
Gene Name(s): mre11 PF1166
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A, B PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.3 Å
  • R-Value Free: 0.308
  • R-Value Work: 0.258
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 177.40 α = 90.00
b = 177.40 β = 90.00
c = 130.42 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-02-01
  • Released Date: 2011-03-30
  • Deposition author(s): Williams, G.J., Williams, R.S., Arvai, A., Moncalian, G., Tainer, J.A.

Revision History

  • Version 1_0: 2011-03-30

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2017-07-26

    Type: Refinement description, Source and taxonomy