3PZ4

Crystal structure of FTase(ALPHA-subunit; BETA-subunit DELTA C10) in complex with BMS3 and lipid substrate FPP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.225

Literature

Macromolecules
Sequence Display for 3PZ4

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 92886.86

Macromolecule Entities
Molecule Chains Length Organism Details
Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha A 379 Rattus norvegicus EC#: 2.5.1.58 IUBMB 2.5.1.59 IUBMB
Gene Name(s): Fnta
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Protein farnesyltransferase subunit beta B 426 Rattus norvegicus EC#: 2.5.1.58 IUBMB
Fragment: UNP residues 2-427
Gene Name(s): Fntb
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
3PZ
Query on 3PZ

B (3R)-3-benzyl-4-[(4-methoxyphenyl)sulfonyl]- 1-[(1-methyl-1H-imidazol-5-yl)methyl]-2,3,4,5- tetrahydro-1H-1,4-benzodiazepine-7-carbonitrile
C29 H29 N5 O3 S
BJWZXDNEKWSGQH-RUZDIDTESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FPP
Query on FPP

B FARNESYL DIPHOSPHATE
C15 H28 O7 P2
VWFJDQUYCIWHTN-YFVJMOTDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
3PZ N/A in BindingDB
IC50: 6 nM  BindingMOAD
IC50: 6 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.225
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 170.75 α = 90.00
b = 170.75 β = 90.00
c = 69.08 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-12-14
  • Released Date: 2011-05-11
  • Deposition author(s): Guo, Z., Bon, R.S., Stigter, E.A., Waldmann, H., Alexandrov, K., Blankenfeldt, W., Goody, R.S.

Revision History

  • Version 1_0: 2011-05-11

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2014-01-15

    Type: Database references, Refinement description, Source and taxonomy