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Crystal structure of RabGGTase(DELTA LRR; DELTA IG) in Complex with BMS3 and lipid substrate GGPP
3PZ2
Primary Citation
 
 
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  •   Molecular Description Hide
    Classification: Transferase/transferase Inhibitor
    Structure Weight: 76343.85
    Molecule: Geranylgeranyl transferase type-2 subunit alpha
    Polymer: 1 Type: protein Length: 332
    Chains: A
    EC#: 2.5.1.60   
    Fragment: UNP residues 1-237 and 353-441
    Details: Residues 1-237 and 353-441 were linked by a four residues linker AGSG.
    Organism Mus musculus
    Gene Name Rabggta
    UniProtKB:   Protein Feature View | Search PDB | Q9JHK4  
    Molecule: Geranylgeranyl transferase type-2 subunit beta
    Polymer: 2 Type: protein Length: 330
    Chains: B
    EC#: 2.5.1.60   
    Fragment: UNP residues 10-339
    Organism Mus musculus
    Gene Name Rabggtb
    UniProtKB:   Protein Feature View | Search PDB | P53612  
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Mus musculus   Taxonomy   Common Name: Mouse Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Mus musculus   Taxonomy   Common Name: Mouse Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    3PZ1   
    3PZ3   
    3PZ4   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    3PZ
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    Download      		3PZ C29 H29 N5 O3 S
    (3R)-3-benzyl-4-[(4-methoxyphenyl)sulfonyl]- 1-[(1-methyl-1H-imidazol-5-yl)methyl]-2,3,4,5- tetrahydro-1H-1,4-benzodiazepine-7-carbonitrile
    		3PZ:3PZ2
    CA
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    Download      		CA Ca
    CALCIUM ION
    GRG
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    Download      		GRG C20 H36 O7 P2
    GERANYLGERANYL DIPHOSPHATE
    		GRG:3PZ2
    ZN
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    Download      		ZN Zn
    ZINC ION
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    3PZ
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    Download      		3PZ
    N/Ain BindingDB
    IC50: 724 nM - data from BindingMOAD  
    IC50: 724 nM - data from PDBbind  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
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  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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