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Crystal structure of mouse DNMT1(731-1602) in the free state
3PT9
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase
    Structure Weight: 99496.47
    Molecule: DNA (cytosine-5)-methyltransferase 1
    Polymer: 1 Type: protein Length: 873
    Chains: A
    EC#: 2.1.1.37   
    Fragment: UNP residues 731-1602
    Organism: Mus musculus
    Gene Names: Dnmt1 Dnmt Met1 Uim
    UniProtKB: Protein Feature View | Search PDB | P13864  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Mus musculus   Taxonomy   Common Name: Mouse Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    3PT6   
    3PTA   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    SAH
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    SAH C14 H20 N6 O5 S
    S-ADENOSYL-L-HOMOCYSTEINE
    SAH:3PT9
    ZN
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    ZN Zn
    ZINC ION
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    SAH
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    SAH
    IC50: 800 - 4000 nM (85) - data from BindingDB  
    N/Ain BindingMoad
    N/Ain PDBbind
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Song, J.,  Patel, D.J.

    Deposition:   2010-12-02
    Release:   2010-12-29
    Last Modified (REVDAT):   2011-03-30
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.50
    R-Value: 0.199 (obs.)
    R-Free: 0.256
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 75.57 α = 90.00 
    b = 79.68 β = 90.00 
    c = 162.65 γ = 90.00