3POY

Crystal Structure of the alpha-Neurexin-1 ectodomain, LNS 2-6


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.02 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 3POY

Classification: CELL ADHESION

Total Structure Weight: 113394.72

Macromolecule Entities
Molecule Chains Length Organism Details
Neurexin-1-alpha A 1019 Bos taurus Fragment: ectodomain (UNP residues 296-1349)
Mutation: ΔT395, ΔS396, ΔG397, ΔI398, ΔG399, ΔH400, ΔA401, ΔM402, ΔV403, ΔN404, ΔK405, ΔL406, ΔH407, ΔC408, ΔS409, Q628E, I1128F, ΔG1263, ΔN1264, ΔN1265, ΔD1266, ΔN1267, ΔE1268, ΔR1269, ΔL1270, ΔA1271, ΔI1272, ΔA1273, ΔR1274, ΔQ1275, ΔR1276, ΔI1277, ΔP1278, ΔY1279, ΔR1280, ΔL1281, ΔG1282, ΔR1283, ΔV1284, ΔV1285, ΔD1286, ΔE1287, ΔW1288, ΔL1289, ΔL1290, ΔD1291, ΔK1292
Gene Name(s): NRXN1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BGC
Query on BGC

A BETA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-VFUOTHLCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.02 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.214
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 199.74 α = 90.00
b = 61.24 β = 121.21
c = 155.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-11-23
  • Released Date: 2011-06-08
  • Deposition author(s): Miller, M.T., Mileni, M., Comoletti, D., Stevens, R.C., Harel, M., Taylor, P.

Revision History

  • Version 1_0: 2011-06-08

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2013-06-19

    Type: Database references