3PKQ

Q83D Variant of S. Enterica RmlA with dGTP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.212

Literature

Macromolecules
Sequence Display for 3PKQ

Classification: TRANSFERASE

Total Structure Weight: 132361.44

Macromolecule Entities
Molecule Chains Length Organism Details
Glucose-1-phosphate thymidylyltransferase A, B, C, D 292 Salmonella enterica EC#: 2.7.7.24 IUBMB
Fragment: Q83D
Mutation: Q83D
Gene Name(s): rmlA rfbA STM2095
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DGT
Query on DGT

A, B, C, D 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
HAAZLUGHYHWQIW-KVQBGUIXSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A, C DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.212
  • Space Group: P 41

Unit Cell:

Length (Å) Angle (°)
a = 109.40 α = 90.00
b = 109.40 β = 90.00
c = 110.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-11-11
  • Released Date: 2011-01-12
  • Deposition author(s): Chang, A., Moretti, R., Bingman, C.A., Thorson, J.S., Phillips Jr., G.N., Center for Eukaryotic Structural Genomics (CESG)

Revision History

  • Version 1_0: 2011-01-12

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance