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Crystal structure of the editing domain of threonyl-tRNA synthetase from Pyrococcus abyssi in complex with glycyl-3'-aminoadenosine
3PD4
Primary Citation
 
 
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Molecular Description Hide
    Classification: Ligase
    Structure Weight: 34123.62
    Molecule: Threonyl-tRNA synthetase
    Polymer: 1 Type: protein Length: 147
    Chains: A, B
    EC#: 6.1.1.3   
    Fragment: UNP RESIDUES 1-147
    Organism Pyrococcus abyssi
    Gene Names thrS PYRAB13430 PAB1490
    UniProtKB:   Protein Feature View | Search PDB | Q9UZ14  
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Pyrococcus abyssi   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1y2q   
    2hl0   
    2hl1   
    2hl2   
    3PD2   
    3PD3   
    3PD5   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    A3G
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    Download      		A3G C12 H17 N7 O4
    3'-deoxy-3'-(glycylamino)adenosine
    		A3G:3PD4
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    A3G
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    Download      		A3G
    N/Ain BindingDB
    Kd: 33300 nM - data from BindingMOAD  
    Kd: 33200 nM - data from PDBbind  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
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  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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