Crystal structure of the editing domain of threonyl-tRNA synthetase from Pyrococcus abyssi in complex with glycyl-3'-aminoadenosine
3PD4
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ligase
    Structure Weight: 34123.62
    Molecule: Threonyl-tRNA synthetase
    Polymer: 1 Type: protein Length: 147
    Chains: A, B
    EC#: 6.1.1.3   
    Fragment: UNP RESIDUES 1-147
    Organism: Pyrococcus abyssi
    Gene Names: thrS PYRAB13430 PAB1490
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  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Pyrococcus abyssi   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1y2q    
    2hl0    
    2hl1    
    2hl2    
    3PD2    
    3PD3    
    3PD5    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    A3G
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    A3G C12 H17 N7 O4
    3'-deoxy-3'-(glycylamino)adenosine
    A3G:3PD4
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    A3G
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    A3G
    N/Ain BindingDB
    Kd: 33300 nM - data from BindingMOAD  
    N/Ain PDBbind
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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