3P2M

Crystal Structure of a Novel Esterase Rv0045c from Mycobacterium tuberculosis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.286 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.220 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal Structure of a Novel Esterase Rv0045c from Mycobacterium tuberculosis

Zheng, X.D.Guo, J.Xu, L.Li, H.Zhang, D.Zhang, K.Sun, F.Wen, T.Liu, S.Pang, H.

(2011) PLoS One 6: e20506-e20506

  • DOI: https://doi.org/10.1371/journal.pone.0020506
  • Primary Citation of Related Structures:  
    3P2M

  • PubMed Abstract: 

    There are at least 250 enzymes in Mycobacterium tuberculosis (M. tuberculosis) involved in lipid metabolism. Some of the enzymes are required for bacterial survival and full virulence. The esterase Rv0045c shares little amino acid sequence similarity with other members of the esterase/lipase family. Here, we report the 3D structure of Rv0045c. Our studies demonstrated that Rv0045c is a novel member of α/β hydrolase fold family. The structure of esterase Rv0045c contains two distinct domains: the α/β fold domain and the cap domain. The active site of esterase Rv0045c is highly conserved and comprised of two residues: Ser154 and His309. We proposed that Rv0045c probably employs two kinds of enzymatic mechanisms when hydrolyzing C-O ester bonds within substrates. The structure provides insight into the hydrolysis mechanism of the C-O ester bond, and will be helpful in understanding the ester/lipid metabolism in M. tuberculosis.


  • Organizational Affiliation

    School of Medicine, Tsinghua University, Beijing, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
POSSIBLE HYDROLASE330Mycobacterium tuberculosisMutation(s): 0 
Gene Names: Rv0045c
EC: 3
UniProt
Find proteins for P71702 (Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh))
Explore P71702 
Go to UniProtKB:  P71702
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP71702
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.80 Å
  • R-Value Free: 0.286 
  • R-Value Work: 0.217 
  • R-Value Observed: 0.220 
  • Space Group: P 31
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 73.465α = 90
b = 73.465β = 90
c = 48.063γ = 120
Software Package:
Software NamePurpose
ADSCdata collection
SOLVEphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-07-06
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2024-03-20
    Changes: Data collection, Database references