3OZV

The Crystal Structure of flavohemoglobin from R. eutrophus in complex with econazole

Structural Biology Knowledgebase: 3OZV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.210

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3OZV

Classification: LIPID BINDING PROTEIN

Total Structure Weight: 94797.23

Macromolecule Entities
Molecule Chains Length Organism Details
Flavohemoglobin A, B 403 Cupriavidus necator EC#: 1.14.12.17 IUBMB
Gene Name(s): hmp fhp PHG200

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DGG
Query on DGG

A, B 1-[GLYCEROLYLPHOSPHONYL]-2-[8-(2-HEXYL-CYCLOPROPYL)- OCTANAL-1-YL]-3-[HEXADECANAL-1-YL]-GLYCEROL
C39 H75 O10 P
JWIOKCJPLNKYBQ-JIZALCTLSA-N
Ligand Explorer
 
JSmol
ECN
Query on ECN

A, B 1-[(2S)-2-[(4-CHLOROBENZYL)OXY]-2-(2,4-DICHLOROPHENYL)ETHYL]- 1H-IMIDAZOLE
S-Econazole (Synonym)
C18 H15 Cl3 N2 O
LEZWWPYKPKIXLL-GOSISDBHSA-N
Ligand Explorer
 
JSmol
FAD
Query on FAD

A, B FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer
 
JSmol
HEM
Query on HEM

A, B PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
JSmol
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
ECN N/A in BindingDB
Kd: 1280 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.210
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 87.22 α = 90.00
b = 87.22 β = 90.00
c = 291.26 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-09-27
  • Released Date: 2011-03-16
  • Deposition author(s): El Hammi, E., Warkentin, E., Demmer, U., Ermler, U., Baciou, L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4